Comments (2)
So "insert-size" is actually the inside measurement and fragment length is the outside measurement.
So qualimap is reporting fragment length of 366 and indexstats is reporting 376.86.
Note that from goleft, insert_mean=86.96 and template_mean=376.86 which makes sense since your reads are about 150 bases each so we expect about 300 bases difference. (template_mean == fragment_length).
from goleft.
Thank you for your quick reply !!
from goleft.
Related Issues (20)
- ndexcv: excluding chromosome: NC_031965 because of exclude-pattern: ^chrEBV$|^NC|_random$|Un_|^HLA\-|_alt$|hap\d HOT 2
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from goleft.