Comments (2)
It may be better to replace pulsar with two scripts added to the galaxy repository.
The scripts would provide CLI access to the logic within galaxy that stages, prepares, and cleans up galaxy jobs.
This can then be used to schedule jobs where there is no required filesystem.
Pulsar has already done much of this work and the logic largely needs to be just ripped out of it.
The k8s runner can then be rewritten to use a job spec template, and that template can specify init containers that execute these scripts. See #8
The scripts should be able to operate with and without direct access to the Galaxy backend database.
from galaxy-container.
See #19
from galaxy-container.
Related Issues (20)
- Delete visualizations fix
- Add scaling celery worker deployment HOT 1
- Improve health checks
- Publish modules
- Generate module docs HOT 1
- Add per tool job annotations for k8s runner
- Change 'wait_for_app' resource to provisioner
- Add support for splitting out job prep/cleanup steps of galaxy into separate containers
- Template job runner
- Fair share
- Rewrite Galaxy container resolver
- Implement tusd service
- Switch from uwsgi to gunicorn HOT 1
- Document deploying on Windows
- Add celery workers HOT 1
- Configure mod-zip
- Implement Hashicorp Vault
- Refactor ansible recipes
- AWS SQS queues need to have a configurable prefix
- Galaxy SQS control queues may need to be cleaned up
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