Comments (2)
V8 will be based on GENCODE 26.
from gtex-pipeline.
So, when running the code from your pipeline, should I use GENCODE v26 files to replace the v19 files in your code (in the pipeline)?
from gtex-pipeline.
Related Issues (20)
- Add pyqtl to qtl/Dockerfile so eqtl_prepare_expression.py runs smoothly HOT 1
- PEER factors as oppose to surrogate variables
- ISO test inputs.json
- rnaseq_pipeline_fastq/bam reference invalid import HOT 5
- torus fastqtl input file HOT 2
- criterion or cut-off used in GTEx v8.signif_variant_gene_pairs.txt HOT 1
- RNA-SeQC v10 returning all zero counts HOT 1
- The script does not seem to work with Ensembls GRch38 release-105 GTF file HOT 1
- missing "qtl" module in leafcutter prepare script
- geTMM normalization
- Population-based phasing reference panel HOT 1
- access to gtex-resources on google cloud
- A default for GTEx run_PEER.R doesn't match the PEER library default
- Missing files and script errors HOT 1
- sample_participant_lookup file -> Genotype and Phenotype are not matching HOT 2
- How to install Bamsync
- Syntax error HOT 1
- Package versions between README.md and Dockerfile differ
- error with eqtl_expression.py HOT 1
- GTEx release V10
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from gtex-pipeline.