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More modeling options about ml4h HOT 4 CLOSED

ndiamant avatar ndiamant commented on July 22, 2024
More modeling options

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ndiamant avatar ndiamant commented on July 22, 2024

Updating with more options would be easier if _conv_block1d and _conv_block2d, etc. were the same instead of separate functions. @lucidtronix why are they different?

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lucidtronix avatar lucidtronix commented on July 22, 2024

@ndiamant, I agree it would be great to unify those functions. They are different because we call several different functions based on the shape of the input x: Conv1D, MaxPooling1D, and SpatialDropout1D, for example. We could make it a second order function and pass these functions in as arguments. The tradeoff is that the fxn signature gets much more complicated, but we get rid of 3x code duplication. Optimization scheme and VAE could be implemented outside of these fxns though.

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lucidtronix avatar lucidtronix commented on July 22, 2024

Also adding todos for our model builder:

  • More activation fxns (PreLUs, Selus, ...)
  • More initialization methods (at least enable all keras strings glorot_uniform xavier etc
  • More flexible autoencoder topologies (at least backdoor connection toggle)
  • TensorMap parents should be specified by TensorMap not by strings
  • Allow multiple input TensorMaps of the same shape (I think this doesn't work yet)

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lucidtronix avatar lucidtronix commented on July 22, 2024

we basically did this stuff.

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