Comments (1)
Therefore, can we remove the site_processing_config.yaml and profiling_config.yaml from the recipe repo?
Yes, I believe so. I don't remember why we originally had config files in the recipe, but the ones in the template (IIRC) are the ones we use regularly.
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Related Issues (20)
- Add multi-plate option HOT 1
- Remove example_site requirement in prefilter feature config HOT 2
- Add logger to capture weld parameters, warnings, and errors
- Include summary step for guide + guide abundances (cell count per perturbation) HOT 12
- Single cell normalization enhancement option HOT 1
- Maintaining different versions of recipe HOT 2
- Barcode controls missing from guide abundance summary (cell count per perturbation)
- Add load_features import
- Convert quality_col to list
- Cell count file is outputting NaN for plate, well, and site_location columns
- Aggregate fails when output_single_file_only option set to False HOT 1
- Error in 4.image-and-segmentation-qc.py HOT 2
- 4.image-and-segmentation-qc.py should produce figures on a per-plate basis HOT 3
- Hardcoding Cells and Nuclei for threshold QC
- Add output file specifically for comparison to NGS data. HOT 1
- Skip corrupted site files HOT 1
- Make folders only when necessary
- Codify new contribution protocol HOT 8
- Change Skip Site/Overwrite Behavior in 0.preprocess-sites
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