Comments (1)
francois-a
commented on July 22, 2024
Hi,
This option enables writing only the lead association for each phenotype when mapping with an interaction term (in cis mode). This wasn't working properly in the CLI, but is fixed in 2b212de.
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Related Issues (20)
- missing tss_distance in cis output HOT 1
- Abnormal results of interaction model HOT 4
- scipy.optimize.newton failed to converge HOT 1
- Warning and Error in tensorQTL trans mode HOT 9
- Memory Allocation Issue during trans-QTL Mapping HOT 3
- Issues with TensorQTL in Trans Mode
- AttributeError: 'dict' object has no attribute 'T' tensorqtl HOT 2
- broken link HOT 1
- Tensorqtl installation HOT 3
- No credible sets output from susie.map because pval_nominal=0 HOT 2
- ValueError: array must not contain infs or NaNs
- interaction HOT 1
- [Susie] ValueError: prior variance must be non-negative HOT 4
- [trans] trans.map_permutations(): KeyError: 'r2' HOT 2
- [map_trans] R2 not returned in interaction analysis HOT 2
- [pval post-processing] Interaction output for cis/trans
- Which beta coresponds to which allele in the outputs?
- cis-mapping with interaction
- Errors in the BackgroundGenerator cause main thread to get stuck
- Questions about the `map_permutations` and `apply_permutations` functions
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