Comments (5)
Hi, yes, this is possible. Please take a look at the section describing interactions in the readme.
from tensorqtl.
from tensorqtl.
The interaction covariate should be in interaction_s
, other covariates (sex, age, etc.) in covariates_df
.
The supplementary materials of this paper describe how tensorQTL was used to map cell type interaction QTLs.
from tensorqtl.
from tensorqtl.
Please take a look at tensorqtl_examples.ipynb. covariates_df
would include sex and age in this case, and the interaction_s
pandas.Series would encode diabetes status (mapping sample ID to status).
from tensorqtl.
Related Issues (20)
- No pval_nominal_threshold output from cis.map_cis() HOT 4
- Discordant num_var between fastQTL and tensorQTL HOT 5
- missing values in genotype HOT 1
- Clarification for the transformation procedure. HOT 1
- QTL interaction error
- NA value in phenotype data
- SyntaxError: invalid syntax HOT 2
- Interaction QTL index error HOT 1
- Allele frequency reported in nominal cis-mQTLs output HOT 1
- TensorQTL for non-genomic data HOT 4
- Regression with phenotype containing 4 expressed genes HOT 1
- Limit the number of multi-threading HOT 1
- Question - genetic data from related HOT 1
- --paired_covariate support for cis_nominal HOT 2
- tensorqtl 1.0.8 not available on pip HOT 1
- Results change when the covariates order change HOT 1
- way to specify technical or biological replicates? HOT 1
- broken link for Geuvadis example datasets HOT 1
- MAF vs Beta looks a bit unexpected HOT 1
- numpy float depreciation causing errors HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from tensorqtl.