plot_isoforms_usage duplication of isoforms in plot

[wdesaintjean]

plot_isoforms_usage duplication of isoforms in plot

[wdesaintjean]

I find a solution:
in the script flair/bin/plot_isoform_usage , you can delete duplication in the list packed and names, before their usage in the function plot_blocks:

new_names = []
for i in names:
    if i not in new_names:
        new_names.append(i)

#print(new_names) 


new_packed = []
for i in packed:
    if i not in new_packed:
        new_packed.append(i)

#print(new_packed)

#plot_blocks(packed, panel, names, iso_to_variant, l=1)
plot_blocks(new_packed, panel, new_names, iso_to_variant, l=1)

# plt.savefig(args.o+'_bars.pdf', transparent=True, dpi=600)  # uncomment to output as pdf
plt.savefig(args.o+'_isoforms.png', dpi=600)

This solution don't resolve the origin of the problem, but avoid to have duplication of the same isoform on the plot

[wdesaintjean]

Thank you again for the tool FLAIR