brucemoran Goto Github PK
Name: Bruce Moran
Type: User
Company: St. Vincent's University Hospital
Bio: Bioinformatics and Cancer Genomics
Twitter: bruler0111
Location: Dublin, Ireland
Name: Bruce Moran
Type: User
Company: St. Vincent's University Hospital
Bio: Bioinformatics and Cancer Genomics
Twitter: bruler0111
Location: Dublin, Ireland
Linear Models for Microarray Data
An R package for automatically aggregating and summarizing lncRNA analysis results.
A Nextflow pipeline to use MANE annotations with GRCh37 and optional BED files.
Survival analysis using Cox PH on METABRIC data
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Aggregate results from bioinformatics analyses across many samples into a single report.
Test data for MultiQC. See https://github.com/ewels/MultiQC
Copy number alteration calls for genomic DNA input to nanopore using NextFlow and Singularity
nf-core tools doesn't download Singularity images properly ATOW
Fill out NVB1 forms from CSV
Fillout NVB1 form automation
Parsing of JSON files from PCGR, CPSR
Repo for utility Perl scripts
R functions
R-IQ-OQ is an R/Sweave based program designed to serve as a foundation for the Installation Qualification (IQ) and Operational Qualification (OQ) of R (http://www.r-project.org/) when used in environments (such as regulated clinical trials) where such processes may be required.
BD Han2 Rat Model of Endometrial Cancer
RNA-seq analysis pipeline for detection gene-fusions
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
RNAseq with Kallisto
R package for DE analysis within RNAseq_kallisto_DE Nextflow pipeline
R functions for use with RNAseq downstream analysis
Shiny app to set up a PostgreSQL table in a database from user input of XLSX files
Singularity recipes
Somatic-Germline n-of-1 DNAseq Analysis
In n-of-1 studies with multiple recurrences and/or metastases, somatic variants may be arbitrarily filtered unnecessarily. This method addresses this issue.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.