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caid

CAI image processing pipeline containers for docker and singularity

caisr.github.io

Describing our tools and imaging workflows

cma

coreg_sim

Simulation code to test the impact of data and alogrithms on coregistration accuracy.

dicom2cloud

This repository is for https://www.healthhack.com.au/ 2017

digitalcontrol

(MAC) Camera Remote Control Application developed @ Centre for Advanced Imaging [University of Queensland]

digitalcontrolserver

Digital Control Server is a server which aim to control camera remotely by using a socket communication.

lashis

Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI.

minc-widgets

Collection of MINC widgets, perl and shell scripts

niftyreg

Mirror of https://cmiclab.cs.ucl.ac.uk/mmodat/niftyreg

optimizing_exercise

Optimising exercise repository for Docker/Singularity images

qbatch

A simple unified interface to gridengine and PBS

qsm

This docker and singularity image bundles the tgv-qsm algorithm with bet2, dcm2niix and provides a complete QSM processing pipeline.

scripts

This repository is a collection of scripts that might be useful

shrf

sHRF

transparent-singularity

Deploying a singularity container so that it behaves like one would have installed software natively

uniqc

Unified NeuroImaging Quality Control (uniQC) toolbox

volgenmodel

volgenmodel creates nonlinear models from a series of input MINC files - modelling was originally created as part of the ANDI project funded by DCRC

volgenmodel-fast-example

Mouse brain data for testing volgenmodel-nipype

volgenmodel-nipype

volgenmodel-nipype is the port of volgenmodel to nipype. It creates nonlinear models from a series of input MINC files.