Comments (2)
How much work is this? From my point of view, this is somewhat beyond our control and not really within CAMISIM's scope. I suggest to simply state that we rely on ete2/3 to download NCBI genomes (which is an optional feature anyway).
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Agreed, there does not seem to be an easy solution.
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Related Issues (20)
- Input genomes HOT 3
- ERROR: [MetagenomeSimulationPipeline] 'M' in line 122 HOT 4
- Meaning of community parameters in config file HOT 1
- Is profile-based design with custom genomes possible? HOT 11
- Errors when running from_profile default HOT 8
- How can I simulate reads data when I manually designed an OTU table? HOT 4
- ERROR: [MetagenomeSimulationPipeline] 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte in line 49? HOT 3
- how to increase the size of the simulated dataset? HOT 1
- No file found for all the reads of the sample in the output HOT 2
- camisim encountered an error when specifying the --hmm_model parameter in pbsim2 HOT 3
- Could not find workflow.nf in the repo. HOT 5
- How to map relevant genomes to OTU through scientific names? HOT 11
- Generation from different genome for same specie HOT 4
- Controlling the rate of error HOT 1
- the data type of CAMISIM long read dataset HOT 1
- Confused by the abundance values in the CAMI2 toy datasets HOT 1
- Handling coverage
- NoneType path error when trying to run metagenome_from_profile.py from default_config.ini HOT 3
- metagenomesimulation.py raising "ERROR: [MetagenomeSimulationPipeline] 'gb|*********.1|:1-****' in line 117" Error HOT 3
- Changing read lengths from the default 150bp HOT 1
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