Comments (3)
Hi Hui,
I suspect that you are using Keras 2.X, which is not yet supported. I will add Keras 2.X until Wed. In the meantime, please use Keras 1.2.2.
- Christof
from deepcpg.
That fixed it, thanks!
Tony
from deepcpg.
The DeepCpG branch keras2 adds Keras 2.x support. Everything works so far, except from loading models trained with Keras 1.x. It will be merged into the master branch once this is possible.
from deepcpg.
Related Issues (20)
- CpG profiles file not found HOT 4
- Can you provide pre-trained models from the DeepCpG model zoo
- This software can only predict the methylation status not the exact methylation level right
- GPU utility in training only about 25% HOT 1
- Unable to train joint model from pretrained cpg and dna model with tensorflow backend HOT 1
- impute CpG values for gene by cell matrix HOT 1
- Models in the zoo are not accessible
- Example data not accessible HOT 1
- Error in train.sh HOT 1
- CpG sites in the negative strand HOT 3
- Download links for example data broken
- Problem with setup.sh when downloading cpg data HOT 1
- Fails CpG module training
- keras / tensorflow version compatibility HOT 2
- keras/tensorflow version incompatibility
- Can't calculate the pair potential
- Recommendations for using in Tumor Normal scenario
- Negative strand index input
- pip install deepcpg => bad interpreter: /anaconda3/envs/deepcpg/bin/python: no such file or directory
- pip install deepcpg does not install tensorflow.
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