caosgc33d Goto Github PK
Name: Song Cao
Type: User
Company: Washington University in St Louis
Bio: Computational biologist
Blog: https://oncology.wustl.edu/people/faculty/Cao/Cao_Bio.html
Song Cao's Projects
10xmapping
mapping somatic variants to each individual cell based on scRNA-Seq data
commonscripts
commonly used scripts
dailybox
germlinewrapper
detect germline variants from normal samples
hotspotrc
Hotspot mutation readcount
machinelearning
Algorithm for machine learning
mgidaily
Dockerfile for mgi
misplice
Discover Mutation Induced Splice Sites
misplice_gcloud
mix
mixing scripts
multiplex-imaging-pipeline
A pipeline for multiplex imaging analysis
neoflow
NeoFlow is a standalone tool developed based on Nextflow and Docker and is developed for tumor neoantigens identification using DNA-Seq, RNA-Seq and MS/MS data.
neoscan
predict neoantigen for indel and snvs
panoply
Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
somaticwrapper
Detect somatic variants from tumor and normal exome data
virusfusion
detect virus integration sites in host genome
virusscan
VirusScan Pipeline
wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
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