carldeboer Goto Github PK

amused

Auditing Motifs Using Statistical Enrichment & Depletion

bigwig-tools

Various tools for manipulating BigWig files

bioconda-recipes

Conda recipes for the bioconda channel.

brockman

Brockman Representation Of Chromatin by K-mers in Mark-Associated Nucleotides

brockmanr

Brockman R package for analyzing k-mer representations of chromatin data

carldeboer.github.io

cisregmodels

Scripts for building computational models of gene regulation with tensorflow

gkm-pca

Code for GKM-PCA

impute-me

impute-me taken down repo

impute-me-1

This is the code behind the www.impute.me site. It contains algorithms for imputing personal genomes, as well as a range of custom-made analysis for genetics-based disease and health.

maude

Mean Alterations Using Discrete Expression

occupancy2popen

This python program inputs different bigwig genome browser tracks representing genome-wide accessibility or nucleosome occupancy, and uses a GMM to classify regions into occupied and unoccupied regions, outputting P(open) to a bigwig file and displaying a graph of the classification data.

ruby-dna-tools

Various libraries containing useful functions for working with DNA sequences, written in ruby. Some tools are not specific to DNA.

uger_tools

Tools for efficiently using UGER

virtualforay

This is a tool to help you learn the names of things. It uses google image search API to retrieve images from a user-defined database, displays the image, and quizzes the user as to the identity of the image. Because google image search API is limited to 100 images per day, this program will stop working after awhile, in which case, you should simply close it and wait a day. However, there is also a known bug where an image fails to load and so hangs indefinitely (sometimes this is because too few image results were returned). In this case, it is best to restart the program.