carlos-a-enriquez Goto Github PK

bdp1_condor

Here I will version control the HTCondor scripts from /home/arturo.carlosenriquez/condor/hg (master node)

bdp1_site1

Will be used to run the computational challenge for 1000 reads. The path will be as follows (master node):

bdp2-cowsay

Used for the cowsay exercise

bdp2-midterm

For the BDP2 midterm assignment

bdp2-test

Will be used for the BDP2 course.

confusion_matrix

Contains cf_matrix.py file with a function to make a pretty visualization of a confusion matrix.

dask-distributed

A distributed task scheduler for Dask

dask-helm-chart

Helm charts for Dask. Statefulset functionality will be added.

dask_k8s

Bioinformatics workflow leveraged through Dask and Kubernetes on a cloud cluster.

helm_charts

To publish some custom helm charts.

hmm_bpti

intertwin-test

To be used to implement the VK on the Dask cluster

lab2

For the tracking of progress in the laboratory of bioinformatics 2 project (2022).

liqo

Customizing the liqo helm deployment

nginx_kube

nginx setup for testing purposes.

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

sosc-2022-githubactions

demo 4 sosc 2022 github actions