Comments (1)
Have fixed one place where this appears in the new non_cap branch not merged). May not have captured all.
from pneumokity.
Related Issues (20)
- add sample ID to stdout HOT 1
- False Ctvdberror HOT 4
- Check Mixed serotype determination - for hit and group in mix. HOT 1
- Collation not correctly collating all data HOT 2
- Error writing empty dataframe HOT 2
- Stop low hits in stage 2 being flagged amber when gene not present" HOT 1
- List index out of range interpreting serotype 39 result HOT 2
- Filename checking for read 1 and read 2 HOT 1
- Add stage 2 for serogroup 25F/25A HOT 2
- Median multiplicity as quality metric HOT 1
- Update outputs to suit "pneumoKity" HOT 1
- onscreen info for serotype within groups HOT 1
- "mixed serotypes" for 19F and 32F/A when not mixed HOT 1
- 18F reference sequence failing with <70% hit RED rag status HOT 1
- Add feature to create % for mixture multiplicities HOT 1
- Remove text from "predicted phenotype" field for group level detemination HOT 1
- Check 25FA determination from ENA panel HOT 1
- raise KeyError(f"{not_found} not in index") HOT 2
- singularity image HOT 1
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from pneumokity.