carushi's Projects
Old project: to analyze http://mouse.brain-map.org
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
A library of JavaScript components to represent biological data
BUM-HMM is a statistical modelling pipeline for interpreting high-throughput RNA structure probing data.
Config files for my GitHub profile.
Pipeline for meta scATAC-seq analyses
Under construction
test
Go binding for GTK
Go-based Modification associated database scanner
Gene Set Enrichment Analysis in Python
Calculate GC contents and kmer frequency for regression
Python codes for Lasso feature selection
LinearRegression with numpy
Repository for the mRNA/protein study (Csardi et al. 2015)
scripts for NGS
Publicly Available Brain image anaLysis tOol kit
Parallel solution for local RNA secondary structure analysis
PROBer: A general toolkit for analyzing sequencing-based βtoeprintingβ assays
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
Docker image which contains samtools, bedtools2, and RT end counter for high-throughput structure analyses
write a simple compiler (c like -> x86_64 assembly language) in golang
Differential analysis of RNA-Seq