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Casey Shannon's Projects

beyond20 icon beyond20

D&D Beyond Character Sheet Integration in Roll20

cellassign icon cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

complex-upset icon complex-upset

A library for creating complex UpSet plots with ggplot2 geoms

enumerateblood icon enumerateblood

A multi-response Gaussian model capable of accurately estimating the composition of blood samples from their gene expression profiles. Fit on Affymetrix Gene ST gene expression profiles using the glmnet R package.

ggmixomics icon ggmixomics

Improved plotting outputs for mixOmics models, using `ggplot2`

mixomics icon mixomics

Master and devel repo for mixOmics on BioC

pandar icon pandar

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=pandaR.

sear icon sear

Simple (effin') Enrichment Analysis in R

shinydiablo icon shinydiablo

An R Shiny application visualizing an integrative, discriminant, multi-omics model (DIABLO) applied to breast cancer data obtained from The Cancer Genome Atlas (TCGA).

visdiablo icon visdiablo

Interactive web-based visualization application for DIABLO models

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