run the ML method ------metadata.yaml not found

[wencyxu]

run the ML method ------metadata.yaml not found

[lacava]

1. what version are you using? (recommend release)
2. analyze.py expects a dataset directory, not a single data file. and it expects to submit to a cluster unless you pass --local flag.

[folivetti]

have you cloned the pmlb repository using git-lfs?

https://github.com/EpistasisLab/pmlb?tab=readme-ov-file#datasets

[lacava]

srbench/experiment/analyze.py

Line 20 in f9fb2ba

parser.add_argument('DATASET_DIR', type=str,

srbench/experiment/analyze.py

Line 21 in f9fb2ba

help='Dataset directory like (pmlb/datasets)')

pmlb/datasets looks like this: https://github.com/EpistasisLab/pmlb/tree/master/datasets

i.e., put your data in a data folder, and pass the parent folder.

if you aren't using the release version you may run into other issues.

[wencyxu]

Thank you so much for receiving your reply ~ I have one more small question. As shown in the picture, I entered a dataset directory (containing tsv.gz and metadata.yaml), but it shows that the folder does not have a dataset.

[wencyxu]

No, I haven't. Because I wanted to use my own dataset instead of PMLB.

[wencyxu]

Thanks a lot!!!😀I can run ML methods now.