cduvallet Goto Github PK

amr-risk

aspiration-analysis-public

Public repo associated with Duvallet et al (2018) aerodigestive microbiome paper

calmap

Calendar heatmaps from Pandas time series data

cduvallet.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

concat_datasets

Scripts to concatenate multiple datasets and process them together, for use with population estimation project

dbotu3

Distribution-based OTU calling

dev-docs

Developer documentation for QIIME 2

docs

Source repository for https://docs.qiime2.org

donor-selection

Exploring donor selection approaches for FMT trials

drug-spending

evolution_game

Game to teach concepts about mutation, diversity, selection, and evolution

match_hmdb

Search for mass-matches between a feature table with mz's and all HMDB metabolites

mbiome-data-viz

Presentation for Cornell microbiome data hackathon (April 2019)

metabolomics

microbiomehd

Cross-disease comparison of case-control gut microbiome studies

ms2_predict

Predict chemical class from MS2 data

phd-docs

Important documents related to my PhD

phd-thesis

Repo with my MIT thesis (non-forked version, to allow for LFS)

phdchat-philosophies

#PhDChat for the Alm lab summit: philosophies on coding and data for comp PhD students

pyjanitor

Python implementation of R package Janitor

q2-dbotu

QIIME 2 plugin for distribution-based clustering

q2-diversity

q2-feature-table

QIIME 2 plugin supporting operations on feature tables.

q2-perc-norm

QIIME2 plugin for percentile normalization to correct for batch effects in microbiome case-control studies

q2-sample-classifier

QIIME 2 plugin for machine learning prediction of sample data.

q2-types

Definitions of common QIIME 2 types.

research-parasite-editorial

GigaScience editorial for the Research Parasite award

results-filecache

A python decorator for caching computations to file.

sewage-variability

Temporal and geographic variability of 16S and metabolomics from residential sewage

sourcingboston

A Food Security and Resilience Hackathon