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Name: CellProfiler

Type: Organization

Bio: Software for quantitative analysis of biological images

Location: Cambridge, MA

CellProfiler

Version Docs Image.sc forum

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. More information can be found in the CellProfiler Wiki.

What version of CellProfiler should I use?

We recommend the stable release of CellProfiler.

You can download a stable release for macOS and Windows from the CellProfiler website.

If you’re contributing or planning to contribute to CellProfiler, you should compile CellProfiler from source. Instructions for compiling CellProfiler on Linux, macOS and Windows are available from CellProfiler’s GitHub wiki.

If you’re the maintainer of a third-party CellProfiler module, you should use the nightly release of CellProfiler. You can download a nightly release for macOS and Windows from the CellProfiler website. Let us know if we’ve inadvertently broken your module by submitting a GitHub issue.

If you’re an enthusiastic CellProfiler user, you should try the beta release of CellProfiler. You can download a beta release for macOS and Windows from the CellProfiler website. Let us know if you encounter a bug by submitting a GitHub issue.

CellProfiler's Projects

.github icon .github

Default files are stored here, such as code of conduct

cellprofiler icon cellprofiler

An open-source application for biological image analysis

cellprofiler-1.0 icon cellprofiler-1.0

:warning: ARCHIVED :warning: CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler

cellprofiler-analyst icon cellprofiler-analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

cellprofiler-build icon cellprofiler-build

Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute

cellprofiler.github.com-backup icon cellprofiler.github.com-backup

OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.

core icon core

Core classes and components used by CellProfiler

distribution icon distribution

Everything needed to build CellProfiler for your favorite environment.

meoir icon meoir

Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org

notebooks icon notebooks

Jupyter notebooks for CellProfiler and friends

pyinstaller icon pyinstaller

Freeze (package) Python programs into stand-alone executables

rfc icon rfc

A place to propose new features for CellProfiler

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