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Matthew DeMaere's Projects

seaborn icon seaborn

Statistical data visualization using matplotlib

seriation icon seriation

Infrastructure for Ordering using Seriation - R Package

shap icon shap

Simple High-throughput Annotation Pipeline

sim3c icon sim3c

Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)

tmbed icon tmbed

Transmembrane proteins predicted through Language Model embeddings

unicycler icon unicycler

hybrid assembly pipeline for bacterial genomes

utils icon utils

Simple miscellaneous utilities

vhulk icon vhulk

viral Host UnveiLing Kit (vHULK)

viralcc icon viralcc

ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes

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