cfljam Goto Github PK

alliummap

Curated public data about genetic markers and mapping in onion and related Allium vegetables

bioconda-recipes

Conda recipes for the bioconda channel.

biotronenvironmentalanalysis

Contains analysis of environmental data from biotron trails

cfljam.github.io

Blogging about working out how to do biology with code

datascienceworkshop

futuremodels

running mixed models via future

galaxy-pcr-markers

Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files

gfbtoolbox

Vagrant VM for Marker and statistical genomics data science

gwaspoly

GWAS software that can handle autopolyploids

hort16axrussell

kiwigoldbreeding

letkeafly

Let the Kea Fly-integrating genotype storage with KEA

mapnetnz.github.io

MAPNet website

ngspipeline

Our NGS Pipeline using Nextflow

onion_bsa_rnaseq_workflow

Workflow for Analysis of Onion Bulked Segregant Analysis RNASEQ

onion_pts_workflow

Workflow for analysis of 454 Parallel Tagged Sequencing of long-range PCR amplicons

pcr_marker_design

Tools for PCR assay design from NGS variant data

polyrad

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

pop-genomics-workshop2019

Content for MAPNET Workshop in analysis of low-coverage population genomic data

psychic-dangerzone

pyrat

Jupyter notebooks plus R definitions for Docker

pyrat_genetics

R genetics tools for Jupyter

selectiontools

Pipeline to take VCF through to Selection Analysis.

socker

Genetic analysis document authoring with Jupyter and Docker

ssr_marker_design

Galaxy Wrappers and helpers for the MISA ttols

statgen_py_vm

Ubuntu 64 bit Vagrant VM for statistical genomics in Python

swc-christchurch

Example repo for SWC @ eResearch

swc_test

test_targets_r4

testing targets R4 issues with callr

tidywgsworkshop

Training and demo material for whole-genome analysis craft