chan-csu Goto Github PK
Name: Chan Lab at Colorado State University
Type: Organization
Chan Lab at Colorado State University's Projects
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
biomassmw
Determining the chemical formulae and molecular weights of macromolecules in genome-scale metabolic models
biomassmwpy
carveme
CarveMe: genome-scale metabolic model reconstruction
inhousecobrafunctions
Some in-house matlab functions compatible with the COBRA toolbox
lll-fva
mag
Assembly and binning of metagenomes
modelecnlggexometabolomes
modelschan2017
The 20 curated models published in Chan et al., 2017, Bioinformatics
necom-fshap
nextflow_sourmash
optforce_bdoh
A repository for bdoh over production work
pyadm1
PyADM1: a Python implementation of Anaerobic Digestion Model number 1
rcj_megtagenomics
A New Repository for RCE Metagenomics Project
reinforcement_learning_modeling
A repository for tracking projects that are based on RL modeling
spades
SPAdes Genome Assembler
spam-dfba
Formal repository for "Microbial Interactions from a New Perspective: Reinforcement Learning Reveals New Insights into Microbiome Evolution"
spatialgut
spatialGut: simulating the longitudinally and radially varying gut microbiota composition
steadycom
Computing the maximum growth rate of a microbial community at community steady-state
tychus
yamp
YAMP: Yet Another Metagenomic Pipeline
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