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antibiotic-resistomes

Potential health risks of antibiotic resistomes in a floodplain ecosystems

args_oap

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

biogeography-of-photosynthetic-microorganisms

cnps.cycle

This is an R package for element cycle analysis using metagenomic data.

earthnetwork

Microbial co-occurrence network inferred from Earth Microbiome Project

edith-thur

MATLAB code and data supporting Carraro L, Mächler E, Wüthrich R, Altermatt F. Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems, Nature Communications (accepted), 2020.

enmsdm

Faster, better, smarter ecological niche modeling and species distribution modeling

fluxweb

Development of an R pacakge that estimates fluxes in food webs

lca_blast_calculator

calculate the LCA for BLAST outputs

lulu

r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)

memusg

A 'time'-like utility for Unix that measures peak memory usage

microbial-community-coalescence

Linking microbial community coalescence to ecological diversity, community assembly and species coexistence

microeco

An R package for data analysis in microbial community ecology

mikropml_demo

modler

An ecological niche model workflow based on dismo

qcmi

To explore biotic associations of microbes at the community level. See the detailed package tutorial (https://joshualiuxu.github.io/).

reference_database_creator

creating reference databases for amplicon sequencing

rivnet

An R-package allowing seamless extraction of river networks from Digital Elevation Models data

rstudiothemes

A curated list of RStudio themes found on Github

sdm_r_packages

A curated list of R packages used in species distribution modelling

ssn-short-course

sublinear-stability

temperature-driven-deterministic-community-assembly-facilitates-the-coexistence

microbial biogeography

tidyverse120

玩转数据处理120题—R语言tidyverse版本

tidyversity

🎓 Tidy tools for academics

tools-microbiome-analysis

A list of R environment based tools for marker gene microbiome data exploration, statistical analysis and visualization

tutorials

Tutorials

warming-network-complexity-stability

Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"

zvhrcode