Comments (2)
Gianluca;
Thanks much for working on this and sorry about the many places to adjust to add new indices. There are quite a few different ways to do it that developed historically, so a few places to adjust. I've added in the bits to point at the output directory from your GGD directories which I hope will get the indexes created correctly for you. Please let us know if you hit any other issues.
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That's great, thanks so much @chapmanb! 🙂
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Related Issues (20)
- gnomad exome issue HOT 5
- Error while adding reference to the given genome to the base index file HOT 1
- Failed to install due to broken link HOT 5
- Feature request: Update Drosophila genome build to support dm6 HOT 5
- mirbase GFF file not installed for mmu even if it is present HOT 2
- a peculiar bug in grch37 dbnsftp recipe HOT 3
- gnomad_exome ggb randomly fails on chr1 HOT 5
- UNPACK_DIR: unbound variable HOT 3
- Issues with installing dbscSNV HOT 7
- Problems with centralized conda installation HOT 2
- Broad FTP login error is causing bcbio-nextgen data upgrade to fail HOT 7
- Integrate additional GiaB samples for validation HOT 1
- limit conda environments HOT 1
- tar -p option causes quota issues in case quota are enforced on group level HOT 3
- Don't use both mamba and conda to install packages
- Incorrect Ensembl release version for hg38 transcripts.yaml
- Installation problem conda package libtiff HOT 1
- Please submit cloudbiolinux/BCBIO related issues to bcbio github
- cloubiolinux.org website is hijacked or domain expired
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