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assembly-annotation-pipeline

Plant genome assembly and annotation pipeline using snakemake

bio_tools

Useful bioinformatic scripts

evolution

Code accompanying The Evolutionary history of 2,658 cancers

finnish_eelgrass_milleniumclone

Somatic genetic drift and multi-level selection in modular species

maxent

Maximum entropy modelling of species geographic distributions.

msprime

Simulate genealogical trees and genomic sequence data using population genetic models

myscripts

neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

somatico

GATK 4 Mutect2 Somático