mplasso's Introduction
# MPLasso ################################################################################ File: README.md A brief introduction about the usage for MPLasso ------------------------------------------------------------------------------- Author: Chieh Lo (Carnegie Mellon University) Email : [email protected] Date : 2017-03-22 ------------------------------------------------------------------------------- Files: ./Demo_Synthetic.R: A demo for synthetic datasets. ./Demo_HMP.R: A demo for HMP datasets. ./R/algorithm.R: Implementation of the MPLasso ./R/calculate_co_occurrence.R: Calculate the prior information based on microbial co-occurrence. ./R/evaluation.R: Evaluate the performacne of the MPLasso. ./R/normalization.R: Log-ratio transformation for microbial data. ./R/real_data.R: HMP data preprocessing. ./R/selection.R: Model selection for MPLasso based on BIC. ./R/syn_data_generate.R: Generation of synthetic data of five different graphs using huge package. HMP datasets: ./data/HMASM/: Post-processing count data and the prior information obtained using @MInter. ./data/HMMCP/: Post-processing count data and the prior information obtained using @MInter ./data/HMQCP/: Post-processing count data and the prior information obtained using @MInter For HMASM, it includes both species interactions and co-occurrance prior information. ------------------------------------------------------------------------------- Quick start: source Demo_Synthetic.R or Demo_HMP.R in Rstudio.
mplasso's People
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.