chinggyliu Goto Github PK

alphafold

Open source code for AlphaFold.

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

chi1_predict

This project aims to predict the chi1 angle of a protein's side chain from sequence information.

chinggyliu.github.io

code_snippets

complex_protein_msa_generation

d2

Speed virtual screening by 50X

diffusion_project_240709

A repository for all diffusion models related stuff

dmasif

drug_drug_interaction

This is the final project for Unsupervised Learning and Data Analysis. The goal of this project is to detect any potential drug drug interation by reading drug labels. This peoject rely heavily on Natural language processing. The project is wriiten in python.

endoad

Endophenotype-based AD Drug Discovery

epileptic_detection_eeg_project

This is the final project for signal processing class. The project is to detect epileptic EEG signal from regular signal. All the code is written in matlab.

gpsnet

hydro-bandaid_manufacture

A project proposal on how to manufacture a smart drug delivery device that could deliver the drug controlled based on different conditions.

kinodata

Collection of scripts / notebooks to reliably select datasets

models

Models and examples built with TensorFlow

nonhomogeneous_hmm

Project report for non-homogenous hidden markov model (HMM)

notebooks

Notebooks using the Hugging Face libraries 🤗

on-the-skin_glucose_sensing_drug_delivery

Project proposal of a device on the skin that sense glucose and deliver drugs

openfold

Trainable PyTorch reproduction of AlphaFold 2

pete_synthesis_project

Green Production of Terephthalic Acid for the Synthesis of PETE

protein_origami

This is my mid-term research report summary for class ECE 481 - Nanotechnology from University of Illinois at Urbana Champaign.

texture_detection

This is the final project for the Computer Vision class. The goal is to classify different textures. The code is written in python.

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.

ttic31160_bioinfo_hw

Homework code for TTIC31160 Bioinfomatics

ttic_31020_introtoml

This is the problem set code I wrote for class TTIC 31020 Introduction of Machine learning. Please revised cautiously.

ttic_31040_introtocomputervision

This is the homework code I wrote for TTIC31040-Introduction of Computer vision. Please revised it cautiously.

ttic_31220_unsupervised_learning

This is the homework code I wrote for TTIC 31220 Unsupervised learning. Please review it cautiously

umich_bioinf540_graphs_maths

This is the assignment code wrote for Bioinf 540: Mathematics of Graph. All the code is written in matlab.

umich_bioinf580_intro_signal_processing

This is the assignment code wrote for Bioinf 580 Introduction to Continuous and Discrete Signals. All the code is written is Matlab.