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basinetdocker

bioaat

Applied Bioinformatics: Transcriptomic Analysis

cnnmirtronpred

codonbert

Repository for mRNA Paper and CodonBERT publication.

dataexploration-bacterial-srna

deepmirgene

DeepMiRGene

densitymap

DensityMap is perl tool for the visualization of features density along chromosomes

dnnpremir

identify pre-miRNAs using CNN models trained on huamn pre-miRNAs dataset

fbgan

Code for A. Gupta and J. Zou, “Feedback GAN for DNA optimizes protein functions,” Nat. Mach. Intell., vol. 1, no. 2, pp. 105–111, 2019, doi: 10.1038/s42256-019-0017-4.

gan

Exemplo de Generative Adversarial Network apresentado em 21/10/2017 no InterCON

gans-bio-seqs

generating-and-designing-dna

Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)

humanpremirna

Source codes for human pre-miRNA identification - Supervised Deep Learning Methods for Human pre-miRNA Identification

improved_wgan_training

Code for reproducing experiments in "Improved Training of Wasserstein GANs"

mathfeature

Feature Extraction Package for Biological Sequences

mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

mirwoods

miRWoods - stacked random forests for the sensitive detection of microRNAs

nta

Nucleotide augmentation for machine learning-guided protein engineering (https://doi.org/10.1093/bioadv/vbac094, 2022)

nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

pre-mirna-classification

A mixed convolution model for Pre-miRNA classification

proteingan

rnaplonc

A tool for identification of plant long non-coding RNAs.

shinycircos2

ShinyCircos plot - 2

terl_antigo

Transposable Elements Representation Learner (TERL)