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atac-seq-pipeline

ENCODE ATAC-seq pipeline

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

esatac

Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis

gatk3-4-rnaseq-germline-snps-indels

Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools

geo

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

idp

Fork of the IDP hybrid-seq alignment -- Apache 2.0 licensed -- Copyright 2014 Kin Fai Au

incubator-echarts

A powerful, interactive charting and visualization library for browser

isoseq

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

isoseq_sa3nup

Documentation and Developers Code Base for Iso-Seq SMRTAnalysis 3.x and beyond

manual-for-running-idp-pipeline

IDP pipeline for identifying novel genes and isoforms

pancanatlas_code_public

Public repository containing research code for the TCGA PanCanAtlas Splicing project

pbpipeline-resources

Pipeline resources used by smrtflow and pbsmrtpipe

salmontools

Useful tools for working with Salmon output

shimmer

Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and its matched normal tissue sample.

spladder

Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

splicemap

A fork of Standford's SpliceMap -- Copyright (c) 2010 Kin Fai Au and John Chong Mu.

suppa

SUPPA2: Fast quantification of differential splicing

suppa_supplementary_data

Supplementary data

v2rayu

V2rayU,基于v2ray核心的mac版客户端,用于科学上网,使用swift4.2编写,支持vmess,shadowsocks,socks5等服务协议,支持订阅, 支持二维码,剪贴板导入,手动配置,二维码分享等