What is the multiple correction method used in CNV region-based assco

[ruqianl]

What is the multiple correction method used in CNV region-based assco

[Jingjiao-ma]

hello

do you us plink v1.07 ?

Regards

[ruqianl]

Hi, The results I have got were by plink/1.0.7. I have actually got multiple versions of plink installed on our cluster. I also have access to 1.9.0 and 2.0.0a. Is it different in terms of the multiple test correction methods? Regards, Ruqian 2018-01-30 19:44 GMT+11:00 MaggieJJ <[email protected]>:

…

hello do you us plink v1.07 ? Regards — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#61 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMSlDJSIyHifq2RcV6Gcu1nRNiNL3zJaks5tPtaDgaJpZM4RxjId> .

[ruqianl]

Hi, I see that the CNV analysis is no longer supported by new versions of Plink. I checked plink/seq too. It does not look like it deals with CNV results, does it? Thank you Regards, Ruqian 2018-01-31 9:22 GMT+11:00 Rachel Lyu <[email protected]>:

…

Hi, The results I have got were by plink/1.0.7. I have actually got multiple versions of plink installed on our cluster. I also have access to 1.9.0 and 2.0.0a. Is it different in terms of the multiple test correction methods? Regards, Ruqian 2018-01-30 19:44 GMT+11:00 MaggieJJ ***@***.***>: > hello > > do you us plink v1.07 ? > > Regards > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#61 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/AMSlDJSIyHifq2RcV6Gcu1nRNiNL3zJaks5tPtaDgaJpZM4RxjId> > . >

[Jingjiao-ma]

Hi,

I also run it by plink v1.0.7, both EMP1 and EMP2 are 1. I am puzzled. My shell is:

plink-1.07-x86_64/plink --cnv-list genomestrip.cnv --map plink.cnv.map --fam genomestrip.fam --cnv-intersect glist-hg38.dms  --cnv-test-region --mperm 10000

Regards,