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Hi! I'm Colin. πŸ‘¨β€πŸŽ€

πŸŽ“ I'm currently an Assistant Research Professor at Georgetown University. Check out what our lab works on here. Our group is moving to Yale University in summer 2024. See you there!

🦠 I'm also director of the Verena Institute, a team of researchers using artificial intelligence to predict the where, when, and how of viral emergence.

πŸ”’ On my Github, you'll find work that uses machine learning and other kinds of data analytics to predict species distributions (like the embarcadero R package), identify the signal of climate change impacts on infectious diseases, or otherwise solve complex problems at the interface between ecology and global health.

Colin J. Carlson's Projects

anophelev icon anophelev

πŸ¦Ÿβ›°οΈ A century of Anopheles range shifts

brevity icon brevity

πŸ¦‡πŸ’ Bipartite rarefaction estimates of viral diversity in mammals πŸ’πŸ¦‡

codependent icon codependent

πŸ‘― β˜• Where you lead, I will follow β˜• πŸ‘―

dame-gideon icon dame-gideon

🌍 πŸ’‰ Why do countries share pathogens? πŸ’‰ 🌍

elton icon elton

🌼🐝 Bayesian joint species distribution models with networks 🐝🌼

embarcadero icon embarcadero

πŸŒ²πŸŒ‰ Species distribution models with Bayesian additive regression trees

falciparum icon falciparum

🦟🦠σ €₯ Detection and attribution of climate change fingerprint on malaria

geomalaria icon geomalaria

β˜€οΈπŸ¦Ÿ Malaria risk in a world with solar geoengineering

helminths icon helminths

πŸͺ±πŸŒŽ The global diversity of helminth parasites

pier39 icon pier39

πŸ‘πŸŒ Remapping Crimean-Congo haemorrhagic fever with BART πŸŒπŸ‘

plague-wna icon plague-wna

πŸ­πŸ—ΊοΈ Mapping plague in the western United States

plasma icon plasma

πŸ—ΊοΈ πŸ‘©πŸ½β€βš•οΈ Plasmodium maps πŸ‘©πŸ½β€βš•οΈ πŸ—ΊοΈ

rangeshifts icon rangeshifts

🐻 πŸ”œ Tools for documenting range shifts πŸ”œ 🐻

westbound icon westbound

Some more convenience tools for BART modeling

wormmaps icon wormmaps

πŸͺ±πŸŒŽ Spatial parasitology and the unmapped human helminthiases

zoonotic_rank icon zoonotic_rank

Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".

zoonotic_spillover_trend icon zoonotic_spillover_trend

Analysis and data from "Historical trends demonstrate a pattern of increasingly frequent and severe spillover events of high-consequence zoonotic viruses."

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