clinical-genomics-uppsala Goto Github PK
Name: Clinical Genomics Uppsala
Type: Organization
Location: Uppsala
Blog: https://www.scilifelab.se/facilities/clinical-genomics-uppsala/
Name: Clinical Genomics Uppsala
Type: Organization
Location: Uppsala
Blog: https://www.scilifelab.se/facilities/clinical-genomics-uppsala/
Snakemake workflow implementing Accel Amplicon (Swift) trimming guidelines.
StackStorm packs to automate sequencing center operations
Provisioning for the Arteria project
A webservice used to monitor runfolders from Illumina instruments and check what state they are in (e.g. ready to process or not).
Conda recipes for the bioconda channel.
Clinical Analyis Pipeline - Snakemake
Coverage Analysis Report tool - Under construction
simple service used to monitor a folder for new files and upload them using a rest api
Stackstorm package used to remove folders after analysis and delivery has been performed
Snakemake workflow to analyse hematological malignancies in whole genome data
FFPE-tissue UMI-based Sequence Artefact Classifier
Geneious workflow with Emu plugin to classify 16S amplicons
Geneious wrapper plugin with Nextclade for clade assignment, mutations calling and quality checks of SARS-CoV-2 genomes
Geneious wrapper plugin for Pangolin to assign pango lineages to SARS-CoV-2 genomes
Geneious workflow for SARS-CoV-2 genome assembly
A repository for storing Uppsala specific configurations of the pipeline in production
Placeholder for solid tumor bioinformatic workflow
Whole exome sequencing pipeline for inherited diseases
Twist Cancer hydragenetics pipeline for HG38
Docker Official Image packaging for MongoDB
A repository for storing Uppsala specific configurations of the Poirot pipeline in production
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Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.