Related Issues (20)
- [User Story] Parse tumor purity estimate to be fetched for Scout
- [Assessment] Ensure no strand-bias issues from using UMI-collapsed reads in TNscope
- [User Story] Rebuild PONs with new samples and bioinfo-methods
- [User Story] Add adapter trimming to the UMI workflow HOT 1
- [User Story] Add more SV databases for frequency filtering
- [User Story] Add MSI analysis HOT 1
- [User Story] Ensure up to date Miro board of balsamic exists
- [Bug] Fix tmp-dirs in some leaky rules HOT 1
- [User Story] Remove low-mappability variants from gnomad vcf used for GENS
- [User Story] Rebuild GENS PON for better X coverage
- Verification Report [v15.0.1] HOT 2
- [Maintenance] Update gene model annotation resources
- [Bug] Clear variant missing in TNscope T/N WGS case HOT 3
- PoN for GMCKsolid v. 4.2 HOT 2
- [User Story] Add Sentieon path argument to case config HOT 1
- [Assessment] A lot of bins filtered in CNV analysis HOT 4
- [User Story] Update TIDDIT to make use of single-end reads HOT 1
- [User Story] Fix issue with filtered regions in CNVkit HOT 9
- [Bug] Sentieon Dedup with UMI consensus BAM issues HOT 1
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