Related Issues (20)
- Version tracking in delivery report HOT 1
- Update resource requests of all rules
- Upload CNV report for TGA to Scout
- Increase time-limit for processes that often time out HOT 2
- COSMIC coding mutations VCF no longer available (v94 deprecated) HOT 2
- Annotate variants with Somatic observation frequencies from LoqusDB HOT 1
- Update COSMIC database to v97 HOT 2
- Revisit the filtering strategy for the UMI workflow HOT 1
- [ Failed Analysis ] CNVpytor float values not accepted by bcftools
- Visualising/trending GC dropout in Balsamic for TGA data HOT 1
- Failed Analysis due to decimal number in the CN field of VCF
- vcf2cytosure container failed
- Singularity bind path
- More sophisticated filters for SV calls with filter MaxDepth
- More sophisticated filters for SV calls with filter MaxDepth #1161 HOT 1
- Update WGS QC criteria
- Fix recurrent problems with BALSAMIC containers
- Investigate the viability of bcftools filter Maximum AF(tumor) < 1
- Update to Python 3.11 (3.7 end of life) HOT 5
- Verification Report [v12.0.1]
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