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Clemens Weiss's Projects

anaconda-mode icon anaconda-mode

Code navigation, documentation lookup and completion for Python.

bamfreq icon bamfreq

get base counts from bam alignment files

bsh-denovo icon bsh-denovo

Sample genotypes from BAM alignments -- discover sites de novo

bsh-ref icon bsh-ref

Sample genotypes from BAM alignments -- based on reference panel data

gpflow icon gpflow

Gaussian processes in TensorFlow

htslib icon htslib

C library for high-throughput sequencing data formats

jaxgps icon jaxgps

Gaussian Process Regression with JAX

mvnclust icon mvnclust

Clustering using multivariate Gaussian mixtures

nquire icon nquire

A statistical framework for ploidy estimation using NGS short-read data

seqfilter icon seqfilter

Filter fasta/fastq(.gz) files by ID and/or sequence length

seqstats icon seqstats

Quick summary statistics on fasta/fastq(.gz) files

sgkit icon sgkit

Statistical genetics toolkit

spacemacs icon spacemacs

A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!

spatialdata icon spatialdata

An open and universal framework for processing spatial omics data

ts-ipc icon ts-ipc

inter-process communication with tree sequences

tskit icon tskit

Analyse, create and manipulate tree sequences.

ugat icon ugat

Exponential decay fitting to ancient DNA C-to-T substitution patterns

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