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androidsharedservices

Library for Android apps containing a simple re-useable single fragment activity.

bioscala

Scala library for bioinformatics, biological sequence analysis and transformation.

bramtools

Playground for genomics using Rust.

cppcoreguidelines

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

disq

A library for manipulating bioinformatics sequencing formats in Apache Spark

docker

Docker files for various environments.

gptesttools

Tools and file utilities for use with GenePattern and GpUnit testing.

hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.

hellbender

GATK4 development

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htscodecs

Custom compression for CRAM and others.

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

htsjdk-next-beta

Staging ground for the development of the next major version of HTSJDK

jopt-simple

Java library for parsing command line options

pgen-jni

Experimental jni wrapper of PGEN libraries

pgen-runner

restexplorer

Simple Android app for calling and returning data from a REST endpoint. Requests can be stored for future retrieval.

samdescribe

Tools for analyzing metadata for SAM/BAM/CRAM alignment files.