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article_page_d3_fig

articlepage

embedding the platform in an HTML article page

biojs-io-newick

Newick Parser in JS - parses newick strings into JSON and JSON into newick

biojs-vis-box-plot

biojs-vis-expression-bar

biojs-vis-wigexplorer

bionode-fasta

Streamable FASTA parser.

blastjs

a BLAST+ wrapper for Node.js

boc-autocomplete

A micro AJAX auto-complete control with no dependencies.

colorbox

A light-weight, customizable lightbox plugin for jQuery

d3_interactive

interactive figure with d3 bar plot

d3visualizations

D3Visualizations

demos

Demos and code samples

drupal8article

Article Drupal

drupalvm8_1

This is the first (testing) Drupal VM 8 (to start migrating my Drupal 7 site in)

elife-tools

Tools for using article data in Python

expvip-web

Wheat RNAExplorer

filesaver.js

An HTML5 saveAs() FileSaver implementation

fisherexact

Fisher exact test for mxn contingency table in python

genbank-output-from-antismash-processing

This script manipulates the antiSMASH (http://antismash.secondarymetabolites.org/) output GenBank cluster files

jats-scraper

standalone article xml scraper for the pppp project

java-project-a-network-analysis-program

This project was done for the purposes of the JAVA class for my masters in Bioinformatics

jquery-autocomplete

Ajax Autocomplete for jQuery allows you to easily create autocomplete/autosuggest boxes for text input fields

livingfigures

Living Figures

mamp_db

this is the repo (as a backup) for the MAMP server database

mamp_server

MAMP server to host the article page and the data upload functionality

node-web-server-formula

formula for the node-web-server VM

nodeserversimplefig

simpler figure

ontologiesreproducibility

ontologies and reproducibility

pattern-library-formula