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NaN handling about spikefinder-python HOT 1 OPEN

philippberens avatar philippberens commented on August 30, 2024
NaN handling

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freeman-lab avatar freeman-lab commented on August 30, 2024

The current implementation now removes any rows that have a nan in either the measured or predicted rates prior to downsampling. In addition, when running the command line tool to score an entire dataset, we take the nanmedian of scores across neurons. In my testing I occasionally found NaNs in the output of the optimization function for the loglik computation for just one neuron, though I wasn't entirely sure why, probably worth tracking down.

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