codyheiser Goto Github PK
Name: Cody Heiser
Type: User
Bio: Computational systems biologist
Twitter: cody_heiser
Location: Nashville, TN
Blog: codyheiser.github.io
Name: Cody Heiser
Type: User
Bio: Computational systems biologist
Twitter: cody_heiser
Location: Nashville, TN
Blog: codyheiser.github.io
Blackjack simulator built in Python
Supervised classification of neonatal data
Modeling TNFa - NFkB signaling after Lipniacki, et. al. (2007) using PySB
dotfile storage
Storage of general utility files for shell configuration, etc.
Kicking around Tuxedo suite for RNA-seq analysis
Packaged implementation of consensus nonnegative matrix factorization (cNMF; Kotliar, et al. 2019) for single-cell data analysis
Packaged consensus Non-negative Matrix Factorization for single-cell RNA-seq data
Useful toolkit in Python3
Useful toolkit in R
Assignments for CPBP8306: Data Analysis for the Biomedical Sciences
Scripts and notebooks for reproducing analysis in the 2020 dropkick manuscript.
Automated cell filtering for single-cell RNA sequencing data
Investigating genetic/transcriptomic/epigenetic causes of drug-induced "idling" state in BRAF melanoma
Tools for manipulation and analysis of single-cell and spatial transcriptomic data
Spatial mapping of human kidney by automated structural segmentation and registration across paired IHC, AF, and IMS datasets
Hetnets in Python (relocated from dhimmel/hetio)
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Collaborative Spotify listening experience
Manipulate counts matrix files and cook scRNA-seq data from command line
Consensus tissue region identification from multiplex molecular image data for digital pathology
A napari plugin for manual spatial registration of two images
Scrape PGA Tour data for historical scores and finishes
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
A python port of the glmnet package for fitting generalized linear models via penalized maximum likelihood.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.