codylslater Goto Github PK
Name: C. Slater
Type: User
Bio: Pursuing neural control.
Twitter: codylslater
Location: New York, NY
Blog: codylslater.com
Name: C. Slater
Type: User
Bio: Pursuing neural control.
Twitter: codylslater
Location: New York, NY
Blog: codylslater.com
Scripts for analyzing brain atlas data (mouse for now, perhaps others later)
Repo requested by Cagatay Aydin (for a paper)
FFBO setup for computing with neural circuits
EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and developed at the SCCN/UCSD
Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IBL, Churchland, Pouget and Pillow (2021)
Common coordinate registration and tissue type discovery using multimodal spatial data (ST + histology)
Mostly a fork of the pybpod without the git submodule structure.
Main repository for IBL rig code
iEEG electrode reconstruction pipeline
Module 1 Assignment for BMEN 6003
Iso2Mesh - a 3D surface and volumetric mesh generator for MATLAB/Octave
Fast spike sorting with drift correction for up to a thousand channels
Lead-DBS is a scientific toolbox facilitating deep brain stimulation electrode locations and connectomic imaging.
Fast, easy-to-use intracranial electrode localization software built entirely in MATLAB
Examples and tooling for using spectral parameterization within a Matlab workflow.
A head-mounted camera system integrates detailed behavioral monitoring with multichannel electrophysiology in freely moving mice
Utilities for managing Neuropixel datasets and Kilosort results
Neuropixels trajectory explorer with the Allen CCF mouse atlas
MATLAB nifti toolbox (orig. from https://www.mathworks.com/matlabcentral/fileexchange/8797-tools-for-nifti-and-analyze-image) with a couple wrappers
phy: interactive visualization and manual spike sorting of large-scale ephys data
PYthon Neural Analysis Package :pineapple:
Snakemake workflow to automatically build and organize reference genomes for common alignment tasks
A simulator for TES
Robust Offline Spike Sorter
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
cortex lab code for electrophysiology
Public Releases of SPM12 - see https://github.com/spm/spm for the Development Version
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