Comments (3)
Indeed; I think this is also due to an older version of rust being used (I should do an audit to determine what the MSRV is for a clean build). It seems that this bug in cargo (assuming "master" for the main branch name) was fixed in 1.55. I'm happy to support older Rust versions if there are no fundamentally newer features being used, but development and CI are usually done on the latest stable rust, which is why these issues didn't show up there.
On rust < 1.55, perhaps the fix is to either pull 0.4.6 directly (it's on crates.io) or to update
https://github.com/COMBINE-lab/alevin-fry/blob/master/Cargo.toml#L41
to
libradicl = { git = "https://github.com/COMBINE-lab/libradicl", branch = "main", version = "0.4.6" }
Thanks!
Rob
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Your fix libradicl = { git = "https://github.com/COMBINE-lab/libradicl", branch = "main", version = "0.4.6" }
works but then libradicl requires also cargo-features = ["edition2021"]
#77
So I now use Rust 1.60.0 and the installation works well
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Thanks for the update! I'll be sure to add these constraints when we refresh the documentation on the next (patch) release.
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Related Issues (20)
- Raw and filtered count data similar to cell ranger output.
- Unmaintained dependency used by alevin fry HOT 1
- Update documentation to include recommended processing for 10x scRNA 5' V2 HOT 2
- Feature request: Support for 10x "flex" fixed RNA data HOT 3
- alevin-fry not generating all required output files HOT 6
- technical limitation to bc length? HOT 2
- Alevin-fry for SMARt-seq3 data
- request for a tutorial using alevin-fry for multiome datasets
- Request for a decoy-aware index in alevin-fry (with a specific case) HOT 6
- Merging replicates with different permit lists HOT 2
- Using genotype based demultiplexing tools on alevin-fry output HOT 1
- Cannot get output HOT 2
- Don't correct barcodes HOT 1
- The barcode or umi spans multi reads HOT 7
- zero-length barcode HOT 2
- almost no genes detected
- CorrectedReads in featureDump.txt
- only 100 cells output from feature barcoding data HOT 19
- How to realize umi-tools directional algorithm in alevin-fry HOT 5
- ExitStatus(unix_wait_status(6)) HOT 24
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