Comments (2)
hiraksarkar
commented on June 12, 2024
Hi @Ci-TJ
Can you please tell me a bit more about your systems. It looks like a compilation error. I would try to reproduce the error.
from terminus.
Ci-TJ
commented on June 12, 2024
Hi. @hiraksarkar
(R40) [ymwang @ ~/linqin/RNA-seq/Analysis]$ [ $(uname -m) = "x86_64" ] && echo "64bit: Yes" || echo "64bit: No"
64bit: Yes
(R40) [ymwang @ ~/linqin/RNA-seq/Analysis]$ grep -q sse2 /proc/cpuinfo && echo "SSE2: Yes" || echo "SSE2: No"
SSE2: Yes
(R40) [ymwang @ ~/linqin/RNA-seq/Analysis]$ cat /proc/version
Linux version 3.10.0-957.1.3.el7.x86_64 ([email protected]) (gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC) ) #1 SMP Thu Nov 29 14:49:43 UTC 2018
(R40) [ymwang @ ~/linqin/SourceCode/terminus]$ cat /proc/version
Linux version 3.10.0-957.1.3.el7.x86_64 ([email protected]) (gcc version 4.8.5 20150623 (Red Hat 4.8.5-36)
(GCC) ) #1 SMP Thu Nov 29 14:49:43 UTC 2018
(R40) [ymwang @ ~/linqin/SourceCode/terminus]$ cat /etc/redhat-release
CentOS Linux release 7.6.1810 (Core)
(R40) [ymwang @ ~/linqin/SourceCode/terminus]$ conda list
# packages in environment at /home2/ymwang/miniconda3/envs/R40:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_llvm conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
binutils_impl_linux-64 2.34 h53a641e_5 conda-forge
binutils_linux-64 2.34 hc952b39_20 conda-forge
bwidget 1.9.14 0 conda-forge
bzip2 1.0.8 h516909a_2 conda-forge
ca-certificates 2020.6.20 hecda079_0 conda-forge
cairo 1.16.0 hcf35c78_1003 conda-forge
certifi 2020.6.20 py37hc8dfbb8_0 conda-forge
curl 7.69.1 h33f0ec9_0 conda-forge
cutadapt 2.10 py37hf01694f_1 bioconda
dnaio 0.4.2 py37hf01694f_1 bioconda
expat 2.2.9 he1b5a44_2 conda-forge
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.2 he06d7ca_0 conda-forge
fribidi 1.0.9 h516909a_0 conda-forge
gcc_impl_linux-64 7.5.0 hd420e75_6 conda-forge
gcc_linux-64 7.5.0 h09487f9_20 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
gffcompare 0.11.2 h6bb024c_0 bioconda
gffread 0.11.7 h8b12597_0 bioconda
gfortran_impl_linux-64 7.5.0 hdf63c60_6 conda-forge
gfortran_linux-64 7.5.0 h09487f9_20 conda-forge
glib 2.64.3 h6f030ca_0 conda-forge
graphite2 1.3.13 he1b5a44_1001 conda-forge
gsl 2.6 h294904e_0 conda-forge
gxx_impl_linux-64 7.5.0 hdf63c60_6 conda-forge
gxx_linux-64 7.5.0 h09487f9_20 conda-forge
harfbuzz 2.4.0 h9f30f68_3 conda-forge
icu 64.2 he1b5a44_1 conda-forge
jpeg 9d h516909a_0 conda-forge
krb5 1.17.1 h2fd8d38_0 conda-forge
ld_impl_linux-64 2.34 h53a641e_5 conda-forge
libblas 3.8.0 16_openblas conda-forge
libcblas 3.8.0 16_openblas conda-forge
libcurl 7.69.1 hf7181ac_0 conda-forge
libedit 3.1.20191231 h46ee950_0 conda-forge
libffi 3.2.1 he1b5a44_1007 conda-forge
libgcc-ng 9.2.0 h24d8f2e_2 conda-forge
libgfortran-ng 7.5.0 hdf63c60_6 conda-forge
libglu 9.0.0 he1b5a44_1001 conda-forge
libgomp 9.2.0 h24d8f2e_2 conda-forge
libiconv 1.15 h516909a_1006 conda-forge
liblapack 3.8.0 16_openblas conda-forge
libopenblas 0.3.9 h5ec1e0e_0 conda-forge
libpng 1.6.37 hed695b0_1 conda-forge
libssh2 1.9.0 hab1572f_2 conda-forge
libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge
libtiff 4.1.0 hc7e4089_6 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libwebp-base 1.1.0 h516909a_3 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.10 hee79883_0 conda-forge
llvm-openmp 10.0.0 hc9558a2_0 conda-forge
lz4-c 1.9.2 he1b5a44_1 conda-forge
make 4.3 h516909a_0 conda-forge
mysql-connector-c 6.1.11 h876a3cc_1006 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
openssl 1.1.1g h516909a_0 conda-forge
pandoc 2.10 h14c3975_0 conda-forge
pango 1.42.4 h7062337_4 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
pcre2 10.34 h2f06484_0 conda-forge
pigz 2.3.4 hed695b0_1 conda-forge
pip 20.1.1 py_1 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
python 3.7.6 cpython_h8356626_6 conda-forge
python_abi 3.7 1_cp37m conda-forge
r 4.0 r40_1004 conda-forge
r-base 4.0.0 hdca8982_3 conda-forge
r-base64enc 0.1_3 r40hcdcec82_1004 conda-forge
r-boot 1.3_25 r40h6115d3f_1 conda-forge
r-callr 3.4.3 r40h6115d3f_1 conda-forge
r-class 7.3_17 r40hcdcec82_1 conda-forge
r-cluster 2.1.0 r40h9bbef5b_3 conda-forge
r-codetools 0.2_16 r40h6115d3f_1002 conda-forge
r-crayon 1.3.4 r40h6115d3f_1003 conda-forge
r-crosstalk 1.1.0.1 r40h6115d3f_1 conda-forge
r-digest 0.6.25 r40h0357c0b_2 conda-forge
r-evaluate 0.14 r40h6115d3f_2 conda-forge
r-fastmap 1.0.1 r40h0357c0b_1 conda-forge
r-foreign 0.8_80 r40hcdcec82_0 conda-forge
r-glue 1.4.1 r40hcdcec82_0 conda-forge
r-highr 0.8 r40h6115d3f_2 conda-forge
r-htmltools 0.4.0 r40h0357c0b_1 conda-forge
r-htmlwidgets 1.5.1 r40h6115d3f_1 conda-forge
r-httpuv 1.5.4 r40h0357c0b_0 conda-forge
r-jsonlite 1.6.1 r40hcdcec82_1 conda-forge
r-kernsmooth 2.23_17 r40hfa343cc_1 conda-forge
r-knitr 1.28 r40h6115d3f_1 conda-forge
r-later 1.1.0.1 r40h0357c0b_0 conda-forge
r-lattice 0.20_41 r40hcdcec82_2 conda-forge
r-lazyeval 0.2.2 r40hcdcec82_2 conda-forge
r-magrittr 1.5 r40h6115d3f_1003 conda-forge
r-manipulatewidget 0.10.1 r40h6115d3f_1 conda-forge
r-markdown 1.1 r40hcdcec82_1 conda-forge
r-mass 7.3_51.6 r40hcdcec82_2 conda-forge
r-matrix 1.2_18 r40h7fa42b6_3 conda-forge
r-mgcv 1.8_31 r40h7fa42b6_1 conda-forge
r-mime 0.9 r40hcdcec82_1 conda-forge
r-miniui 0.1.1.1 r40h6115d3f_1002 conda-forge
r-nlme 3.1_148 r40h9bbef5b_0 conda-forge
r-nnet 7.3_14 r40hcdcec82_1 conda-forge
r-processx 3.4.2 r40hcdcec82_1 conda-forge
r-promises 1.1.1 r40h0357c0b_0 conda-forge
r-ps 1.3.3 r40hcdcec82_0 conda-forge
r-r6 2.4.1 r40h6115d3f_1 conda-forge
r-rcpp 1.0.4.6 r40h0357c0b_1 conda-forge
r-recommended 4.0 r40_1004 conda-forge
r-rgl 0.100.54 r40ha687ee4_1 conda-forge
r-rlang 0.4.6 r40hcdcec82_0 conda-forge
r-rpart 4.1_15 r40hcdcec82_2 conda-forge
r-shiny 1.4.0.2 r40h6115d3f_1 conda-forge
r-sourcetools 0.1.7 r40he1b5a44_1002 conda-forge
r-spatial 7.3_12 r40hcdcec82_1 conda-forge
r-stringi 1.4.6 r40h0e574ca_2 conda-forge
r-stringr 1.4.0 r40h6115d3f_2 conda-forge
r-survival 3.1_12 r40hcdcec82_1 conda-forge
r-webshot 0.5.2 r40h6115d3f_1 conda-forge
r-xfun 0.14 r40h6115d3f_0 conda-forge
r-xtable 1.8_4 r40h6115d3f_3 conda-forge
r-yaml 2.2.1 r40hcdcec82_1 conda-forge
readline 8.0 hf8c457e_0 conda-forge
rust 1.45.0 h516909a_0 conda-forge
sed 4.7 h1bed415_1000 conda-forge
setuptools 49.2.0 py37hc8dfbb8_0 conda-forge
sqlite 3.30.1 hcee41ef_0 conda-forge
stringtie 2.1.2 h7e0af3c_1 bioconda
tk 8.6.10 hed695b0_0 conda-forge
tktable 2.10 h555a92e_3 conda-forge
ucsc-fatotwobit 377 h446ed27_3 bioconda
wheel 0.34.2 py_1 conda-forge
xopen 0.9.0 py37hc8dfbb8_0 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.9 h516909a_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xz 5.2.5 h516909a_0 conda-forge
zlib 1.2.11 h516909a_1006 conda-forge
zstd 1.4.4 h6597ccf_3 conda-forge
(R40) [ymwang @ ~/linqin/SourceCode/terminus]$
Is it enough?
from terminus.
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