Comments (1)
mr-c
commented on June 2, 2024
Hello @sagnikbanerjee15,
We don't have that as a feature in the CWL standards itself.
However you could
- use
dockerPullwithout the registry (debian:sliminstead ofdocker.io/debian:slim) - And work with your CWL vendor to cycle through a variety of container registries provided by a separate configuration mechanism for those
dockerPullentriws that don't have an explicit registry specified.
Perhaps those registries could be specified in an additional field in DocketRequirment in a future version of the CWL standards (or as a vendor specific extension now), but I feel like such a list would be quite site specific. So I don't know if it makes sense to include in CommandLineTool/Workflow which are supposed to be portable.
Perhaps this situation could also be solved by the use of https://github.com/ga4gh/data-repository-service-schemas for the container. But support for GA4GH DRS is not part of CWL v1.0 through v1.2, so use of it could impact portability.
from common-workflow-language.
Related Issues (20)
- Register CWL as an "identified ICT standard" for EU public procurement HOT 4
- rename/alias dockerImageId to dockerImageName HOT 1
- error: error while writing Hello: /var/spool/cwl/Hello.class HOT 16
- $graph: extend schema to represent that cwlVersion must be present at the root?
- conformance tests should not depend on the contents of the 'location' field in Files, Directories
- Gather implementation guidance
- Some tools behave differently if stdin is a plain file versus a device
- Allow not only bind-mounts as inputs but also named volume mounts HOT 2
- Create a "CWL linter" tool HOT 2
- enums as URIs: enhance documentation, fix behaviour
- More custom data types HOT 1
- channels concept HOT 7
- Extract tool and version for cwl provenance
- Support local paths for dockerLoad & dockerImport
- conditional step with `pickValue` method in inputs crashes when condition does not apply HOT 1
- cwltool --print-deps fails with workflows having namespaced location steps HOT 1
- schema: explore removing the other values from cwlVersion (except the current version)
- [Output Directory] Output the file on a specific directory
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