Comments (5)
Thanks to @dfornika for the reminder
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Are these also good examples of cwltest
tests?
https://github.com/common-workflow-language/workflows/tree/master/test
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@dfornika Perhaps not, they aren't being used in that repo. Can you tell me more about your use case?
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I'm trying to learn how to build CWL pipelines. I'm building the SNVPhyl pipeline:
https://github.com/dfornika/snvphyl-commonwl
I'd like to be able to test that the tools are functioning properly. I've written a few small example jobs (in the test
directory but when I saw that there is a cwltest
tool, I figured it would be good to learn how to use it.
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The CONFORMANCE_TESTS.md file added as part of that last pull is certainly better than nothing. Any chance it can be linked to
the official https://cwltest.readthedocs.io/?
Along with an (updated) link to the conformance_tests.yaml
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Related Issues (20)
- Ability to "mock" the base command
- Add ability to run cwltest without testing the output HOT 2
- Dependabot couldn't authenticate with https://pypi.python.org/simple/
- Move label to id HOT 1
- new command line option that takes a list of test ids to exclude
- "-l" should list test labels in addition to the doc string HOT 1
- if no 'doc', print the label/id HOT 1
- Manage log streams when runnign multiple tests in parallel HOT 3
- Losing JUnit output for timed-out tests
- cwltest validates the field values in `File` and `Directory` objects but does not validate files and directories on disk HOT 2
- No feedback when --test file.yml fails to parse?
- An invalid output object from the engine causes an exception internally
- Examples and/or brief instructions? HOT 2
- Print test number if test failed HOT 1
- logging of debug messages not possible since --quiet hardcoded in cwltest HOT 1
- JUnit result does not provide the results for individual testcases HOT 2
- After N timeouts, abort tests
- [Regression?] `--only-tools` does not work with Python 3.6.5 HOT 1
- test failed, not sure why HOT 6
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