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Stephanie Hyland's Projects

bed-metric icon bed-metric

Calculate a sort of 'information content' for data in bed format, by seeing how many unique positions are recovered as a function of the total read depth.

bf2 icon bf2

brí-focal, version 2

bots icon bots

Twitter bots, IRC bots, bots that make other bots. The world of bots is limitless.

cac-detect icon cac-detect

Automatic identification of coronary artery calcifications in low-dose CT scans using machine learning techniques.

dreg icon dreg

Detecting Regulatory Elements using GRO-seq and PRO-seq

edward icon edward

A probabilistic programming language in TensorFlow. Deep generative models, variational inference.

hi-ml icon hi-ml

HI-ML toolbox for deep learning for medical imaging and Azure integration

london-map icon london-map

An interactive representation of the Berlin U-Bahn system

mastodon icon mastodon

A glitchy but lovable microblogging server

medius icon medius

Pelican theme inspired from medium - forked to make adjustments for my purposes.

metamap_parser icon metamap_parser

A python script for parsing the JSON output of the NLM MetaMap tool

mimic-code icon mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC-III database

mimic-website icon mimic-website

Website for the MIMIC Critical Care Database (currently version MIMIC-III)

models icon models

Models and examples built with TensorFlow

nhanes icon nhanes

Some scripts for the analysis of data from the National Health and Nutrition Examination Survey (NHANES).

plinkline icon plinkline

Finding regions of selection with iHS and XP-EHH, a pipeline between PLINK, scripts from the Pritchard lab and beyond.

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