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assembly-stats

Provides some of the common assembly statistics used to identify how good a metagenomic assembly is.

bioinformatics-master-degree-report

A two-year apprenticeship in computational biology condensed.

biolink-model

Schema and generated objects for biolink data model and upper ontology

consortm

ConsortM: MALDI-based consortia monitoring

cpauvert.github.io

Personal website powered with Pelican

cv4tw

LaTeX CV class, with assets, social networks, and customizable styles

dataharmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions fr

imgmc

Repository of the integrated mouse gut metagenomic catalog

in-phi-luence

Automatic fetch of Philosophers influence from Wikipedia and InPho and visualised as a network in Shiny app

latex-template-phd-univ-bordeaux

Unofficial LaTeX template for PhD thesis of the University of Bordeaux / Modèle LaTeX non officiel pour les thèses de doctorat de l'Université de Bordeaux

linkml-project-cookiecutter

A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.

m2-hmm-prediction

Projet M2 de prédictions de gènes via HMM

m2-zenity

md5sum-in-gz

Bash scripts to compute/verify md5sums in gz-compressed files

mdmcleaner

MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs

metadatastandards

The primary objective of this GitHub page is to serve as a centralized repository for existing (meta)data standards.

mi-atlas

Interactive and evolving catalogue of microbial interactions based on the framework of Pacheco and Segrè (2019)

minto

Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data

nfdi4microbiota-knowledge-base

The NFDI4Microbiota Knowledge Base

plnnetwork-workflow

Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)

postman-cli

A client software for dataset request and download from openBIS

prepare-for-cran

A Collaborative list of things to know before submitting to CRAN

psadd

PSADD -- PhyloSeq ADDitions

quarto-legendary-giggle

Testing Quarto presentations and index pages via Github pages

r-snake-reprex

Creating a reproducible example for R and Snakemake

rformassspectrometry

The R for Mass Spectrometry meta-package

shell-genomics

Introduction to the Command Line for Genomics

shinyfiles

A shiny extension for server side file access

smk-wk-as-module

snakemake

This is the development home of the workflow management system Snakemake. For general information, see