abner_wrapper

ABNER is a widely used named entity recognition (NER) tool. AOPbot provides seamless integration with ABNER through a dedicated Python wrapper.

ai4omics-practical-session

AI4Omics Practical session

aif360

A comprehensive set of fairness metrics for datasets and machine learning models, explanations for these metrics, and algorithms to mitigate bias in datasets and models.

aop-helpfinder

aop-helpfinder-1

A tool to help users to establish adverse outcomes pathways.

aopbotvisualizer

Network analysis platform for evidence gathered using AOP-bot

aopwiki_explorer

A query engine to retrive information from AOP wiki graph database.

archer2-python

ARCHER2 Python course

awesome-cheminformatics

A curated list of Cheminformatics libraries and software.

awesome-cli-apps

🖥 📊 🕹 🛠 A curated list of command line apps

awesome-kbqa

Paper list of KBQA

awesome-molecular-dynamics

:sunglasses: A curated list of awesome Molecular Dynamics libraries, tools and software.

awesome-pretrain-on-graphs

A curated list of resources for pre-training on graphs.

babyagi-numpy

A version of BabyAGI with numpy instead of pinecone and an evaluation agent to check success criteria

bbpred

Classical Machine Learning approach for drug penetration across BBB

bere

bern2

BERN2: an advanced neural biomedical namedentity recognition and normalization tool

bern2integration

bio-lm

We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.

biocaster_2021

This is a public repo for codes and resources of BioCaster 2021: http://www.biocaster.org

biogpt

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core

biomedical

Tools for curating biomedical training data for large-scale language modeling

bioner-progress

This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).

botannotator

BotAnnotator is combination of different NER tools for biomedical domain.

c--

cellfinder

This corpus contains 10 PubMed Central full text annotated in the stem cell domain.

chemanalyzer

Analyze molecule from your browser extension

chemprop

Message Passing Neural Networks for Molecule Property Prediction

coding-interview-university

A complete computer science study plan to become a software engineer.