Comments (9)
Confirmed on another cluster as well (XSEDE bridges), this time with a more recent MKL and slightly different .so files displayed. Looks like libmkl_core.so might be the best one to look for, or just "libmkl".
[ck37@br005 3-analysis]$ lsof -p 17013 | grep libmkl
R 17013 ck37 mem REG 0,42 28137653 54600213 /opt/intel/compilers_and_libraries_2017.4.196/linux/mkl/lib/intel64_lin/libmkl_core.so (br001.opa.bridges.psc.edu:/nfs/opt/intel)
R 17013 ck37 mem REG 0,42 28634975 54600196 /opt/intel/compilers_and_libraries_2017.4.196/linux/mkl/lib/intel64_lin/libmkl_intel_thread.so (br001.opa.bridges.psc.edu:/nfs/opt/intel)
R 17013 ck37 mem REG 0,42 9734508 54600205 /opt/intel/compilers_and_libraries_2017.4.196/linux/mkl/lib/intel64_lin/libmkl_intel_lp64.so (br001.opa.bridges.psc.edu:/nfs/opt/intel)
from benchmarkme.
Thanks for the report. So in the above code, what should be returned for blas & lapack?
Thanks
from benchmarkme.
I think "mkl" would be reasonable - that is what R shows in ./configure when building from source.
from benchmarkme.
Do you mkl
for both blas & lapack?
I just noticed, but does the lp
in libmkl_intel_lp64.so
stand for lapack?
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from benchmarkme.
Would you try https://gist.github.com/csgillespie/b0ddf5b54d806e8b3c02d236ebf5ecdf
from benchmarkme.
Trying it on another system it looks like there is a different lapack path, so that current proposed grep search would need to be modified a bit:
/global/software/sl-6.x86_64/modules/langs/intel/2015.6.233/mkl/lib/intel64/libmkl_gf_lp64.so
from benchmarkme.
Thanks. I've updated the blas detection in the latest GitHub version. It should pick up your configuration. Would you check when you have a minute?
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Using sessionInfo should return the correct lib
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Related Issues (20)
- System details fails when package not loaded HOT 1
- Setting MB options
- errors benchmarking with multiple cores? HOT 1
- Release benchmarkme 1.0.2
- `get_ram` not working on Windows 10 HOT 12
- `get_ram` doesn't work in Kaggle note books HOT 1
- Missing import: Error in globalVariables(c("a", "b", "ans")) : could not find function "globalVariables" HOT 1
- Possibility to access the benchmark dataset HOT 1
- Incorrect/outdated docs: get_ram() says it uses memory.size() on Windows HOT 1
- get_ram() reports incorrect RAM on Windows HOT 2
- Error at benchmarkme HOT 2
- Parallel option not working HOT 2
- CRAN issue:
- benchmark_std crashes in cross-product HOT 1
- Strange timing results HOT 3
- Different number of machines in comparison of plot(res) HOT 3
- get_ram() returns NA B on Windows 10/11 Pro machines HOT 6
- get_cpu() and get_platform_info() do not work correctly on PowerPC
- get_ram() cannot retrieve RAM HOT 1
- Use rhub-v2
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